rs33212906 SNP Detail

Summary

• ID
  rs33212906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131870672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCACTTAA TAAACGTGGA TTGAAAGTAT GGCAAATCAA
  CCTCAGGTTC CTCATTTACG TGCTCTTCAA AGATATCCCC TGGCTGAATC TGCCGGCTAT
  Y
  TTTTGAGAAC CGTGACCCTA ATTTTTTTCT TCCCACTGTC CCAGGGCCAT TTACCGCAGG
  GACAGAGCCG GCTCTGACAA ATTGTCATTT GTCCACCGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45250181	mCV23344124	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss147616095	ENSMUSSNP5166398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss320508272	CHEV_2_131854488	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33212906					SNP	T	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131870672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12299	CpG island 12299	311 bp proximal
Gm31179	predicted gene, 31179	1699 bp upstream
Gm75461	predicted gene, 75461	1234 bp upstream
Rassf2	Ras association (RalGDS/AF-6) domain family member 2	Intron
Rr367316	regulatory region 367316	537 bp upstream
Rr397324	regulatory region 397324	1153 bp upstream
Rr565378	regulatory region 565378	1002 bp distal
Rr565379	regulatory region 565379	257 bp distal
Rr565380	regulatory region 565380	744 bp proximal
Rr565381	regulatory region 565381	1292 bp proximal
Tssr20292	transcription start site region 20292	1068 bp downstream
Tssr20293	transcription start site region 20293	398 bp downstream
Tssr20294	transcription start site region 20294	1228 bp upstream
Tssr26436	transcription start site region 26436	409 bp downstream
Tssr26437	transcription start site region 26437	436 bp downstream
Tssr26438	transcription start site region 26438	1036 bp downstream
Tssr26439	transcription start site region 26439	1056 bp downstream
Tssr26440	transcription start site region 26440	1063 bp downstream
Tssr26441	transcription start site region 26441	1072 bp downstream
Tssr26442	transcription start site region 26442	1093 bp downstream