rs33207456 SNP Detail

Summary

• ID
  rs33207456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155968381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGGGTTA GCTGAAATTA
  TCATACAATT GCAGGAAGTC AGCAGGAAGC TAATCCAGTG CTCTGGCCAA AGAACACAAA
  AGCATTGTAG ACTGAACACA GCAGTCTTGC TGCATCGTCT CTTCAGGGGG AAAAACCAAG
  TTCCCAAGAA CTTCTTTGAG GCCTCACATC CCAGCCTCAG ACTGGGCCTT ACGCAGTCTG
  Y
  CCCTATGCAA GGACACAGAA CTAGTCTCTT GTTTCTCTCA TCAGGGCCTC TGATAAAAGC
  CTTGCATCTG TCTGGCTCTC AACACTCCAG CCAGATCATT TCTTACCTCT GATTTCTTCC
  CACAATTTGG CTGGTTAGAG TACCTAACTG GCAACTATTA CCTTTTATAC TGTCGGTGGG
  GACGCTCGGG ACTTCCAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46784997	NES10992262	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33207456					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784997	NES10992262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155968381 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606605	regulatory region 606605			within coordinates