rs33205729 SNP Detail

Summary

• ID
  rs33205729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155967587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAAGAA AGAGGGCCAC
  TCAAGAATGA ATTTAGGACT TGCTAGCCAC AGAGAGAGCC AGCCTTTGGC CTAAATGTTC
  AAACCACCAC ACAAAAGCAT ATTTATTGAT TGTTAAACAA AAGTTGGTTT TTTTTTTTTT
  TTAGTAAAAC AAGGTCCTCA TACCAAAGCT CTTGAAGGAA AACCTCACAC CCTGCAACCC
  Y
  AGTCCTTGTC ACTGTTTGCA GGACCCAATA ATGTGTGATG CTCCTGGTGT GCCAGGATGG
  CCTTGCGACC AAAGTCATGC AAAGGCTGTA AAGCTCCTTC AGAAAAAAAG TCACTGTTTT
  CCACAGAGAT TTCTTCAAGG TCTGAATACG TCTAGAAACT AACTGTTCAT TCTAATGTTT
  ACCCTAACTA TGATAATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46784976	NES10992334	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33205729					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784976	NES10992334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155967587 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606604	regulatory region 606604			1680 bp distal
Rr606605	regulatory region 606605			523 bp proximal