rs33203780 SNP Detail

Summary

• ID
  rs33203780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155967318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATCCATGT GCTTTGCCTA TGGAAGACTC CATGTTACAA
  TGTACAGGAA TCTCACAGGC TCTGGGAGAC ATTCCTCTTA CCCATTCCTC TTACCAGTCT
  Y
  TGTGTGGCAG ACATCCCTGG AGAAAGACAA CACACAGGTC TGATTCAGTA TTCTGAGTTG
  CTCAGCATAA TCAAAGAAAG AGGGCCACTC AAGAATGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46784955	NES10992315	PERLEGEN	MM_PANEL2	f	SNP	C	T	T		T	T	T		C
ss321443592	CHEV_4_155256970	CHEVERUD	SCREENING_POP	f	SNP				T				C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33203780					SNP	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46784955	NES10992315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155967318 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606604	regulatory region 606604			1411 bp distal
Rr606605	regulatory region 606605			792 bp proximal