rs33192946 SNP Detail

Summary

• ID
  rs33192946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153082242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGGCCTCTT TGGAGTCCCT TTGATTCCCT ATTTCCTCAG ATTCCCGCTG CCTCCCAGCC
  CTGGGGAGGC CTGGAGCAAA TGGCTGCAAC TCACTCGGGC CTCATTTTCA CCTACCACCC
  CTCCGCAACT TAGCAGCCTT TCCCCCAAGA GGAGAGGGTT AGAAACCCAA GGCCAGACTT
  ATCACAGCCC CAGGCTGACA GGTGGAAAAA CACACAAGCC AGGAGTCGGT ATGCTTGCAG
  GTGAAAGCCC CAACTCCCAA CACGGCCAGG AACGCGGCCC GCCACCGCGC CACCGCCCCC
  Y
  CTCGCCCCCC CCCCCGCGAC CCCGATCTGT TCCAAGCTGG ACTGAAGCAT GGGGCTGAAG
  TTGTAGGAAG TCTGGCCCTT AGGCCAGCGG ATAGACTACC CTATTTTGTA GTGTGAAATG
  TTAAATTCTC CCCACAATTG GAAGGTGGAT GTAAAGAGTG GAGACAAGAG ACGGGAATTC
  AATAGTAAGT CTAAAAAGTC TAATAGGATC TGGGGTGGGA AGAGCAAGCA TGCACGGTAA
  AGAATTACGA GCACGTTATT TGAGTCTCTA AGAGACCCCA TGGGGGGAAG AGGTAGGGAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45248347	mCV23160821	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33192946					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153082242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	505 bp proximal
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	1211 bp upstream
Rr567587	regulatory region 567587	1556 bp distal
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	1094 bp proximal
Rr567590	regulatory region 567590	1634 bp proximal
Tssr20880	transcription start site region 20880	593 bp upstream
Tssr20881	transcription start site region 20881	607 bp upstream
Tssr20882	transcription start site region 20882	1130 bp upstream
Tssr20883	transcription start site region 20883	1180 bp upstream
Tssr20884	transcription start site region 20884	1285 bp upstream
Tssr26895	transcription start site region 26895	1021 bp downstream
Tssr26896	transcription start site region 26896	1036 bp downstream
Tssr26897	transcription start site region 26897	1080 bp downstream
Tssr26898	transcription start site region 26898	1175 bp downstream
Tssr26899	transcription start site region 26899	1387 bp downstream