rs33189909 SNP Detail

Summary

• ID
  rs33189909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155833410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATTCAG CATCACTCTC
  CAGCCTGAGG AGCAGTTTTG TACACGGCCC GAGTTAAAGT GTCCACAGGA GACACTGCTG
  GGAGAGAAAG GCAGGGGTTA GGAGCACAGG CCTGACCTGA GAGCCAAACC TGGGATTCCT
  GCTGATTCGG GATCACTGTA GAGGGCGGGG TGGTCCGTGA GGAGGATGTT ATGTTACGCA
  Y
  CTCCAGGACT CCGGCTCAAT CACAAACTTC CCAAACTTAG AGGGAAAAGC AACTAAACTG
  CAGCCTCGGC CTGTGCATCA TGAAGGCCTC GCCTTTCTGT GCTCTAGGTC ATAGCAACCT
  CTAGGCCAGT CCTTTGCGAG ACTGGCTTAG AGCACCCAGC TCTGACCAAC TCCCAAAGCC
  AGACAGGGTT CTAGAACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46783629	NES10998275	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33189909					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783629	NES10998275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155833410 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atad3a	ATPase family, AAA domain containing 3A			Intron
				Noncoding-Transcript-Variant
Rr606559	regulatory region 606559			452 bp proximal
Rr606560	regulatory region 606560			573 bp proximal