rs33182888 SNP Detail

Summary

• ID
  rs33182888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165837603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTTTGC CTGTGTGTAT
  GTTGGTTGGT ACACCGCATC TTGCCTGTGC CTTGTGTCTG TGGAGGCCAG GAGAGAATGT
  TAGATTCCTT GGAATTCAGT TACAAATAGT GAGCTGCCAT GTACATGCTG ATATTCGAAC
  CCTGGTCCTC TGAAAGTGTA GCAAGTGCTT TAAACCACTA CGCCACCATC TCTCCATCCC
  R
  TCTTTGGTGT TTTGAGATGC TCAGGCCCGT GTGGAACCCG GCATCTCTCC ATCCCGTCTT
  TGGTGTTTTG AGATGCTCAG GCCCGTGTGG AACCCGGAGC TTATATTTCT GGTTGGTCTT
  GAACTCGTGA TCTTCCTGCC TCGCCCTTCA GATGCTGGGA TTAGAGACTT ATGACACCTC
  AGGATTATTT ATTACCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45247234	mCV23746330	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss148248058	ENSMUSSNP6904563	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33182888					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165837603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12718	CpG island 12718	1961 bp distal
Ncoa3	nuclear receptor coactivator 3	Intron
Rr570097	regulatory region 570097	1558 bp distal
Rr570100	regulatory region 570100	1113 bp distal
Rr570101	regulatory region 570101	362 bp proximal
Rr570102	regulatory region 570102	1751 bp proximal
Tssr21752	transcription start site region 21752	1705 bp upstream
Tssr27667	transcription start site region 27667	1940 bp upstream