rs33182466 SNP Detail

Summary

• ID
  rs33182466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155634634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCAGCCT CATGTATAGA
  CTTGAGTTCC AGAACAGCCA GGGCTACAAA GAGAAACCCT GTCATAAACA AACAAACAAA
  TAAGACAGGC ACATACATAT GTACATGTGT GTGTGCGCAT GCGTGTACGT GCACTTTTTT
  TCTTTTTTTT TTTTTGAAAA TGTGACTGTT GCCTAGATAC TATTTTTAAG GCGACTGGAA
  Y
  GTAGGCACAG ATTGGTCTCA ATGCTAATCC CTAGGGACTG ATGAAGAAAG AGTGGAAAGG
  TGGCCTCAGA GCTGCTGTTT TGAGACCTTT AGTTCTGGTC CCGAGGGCCA TGATTTGCCT
  GCCCTTCTGA TGTAACATGG TGTTGCCATT TAGTATTGTG ACCTCGTAGA GTGAGTAGCT
  AGAACATTCT GGTGTATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46781700	NES10988621	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33182466					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46781700	NES10988621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155634634 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gnb1	guanine nucleotide binding protein (G protein), beta 1			Intron
				Noncoding-Transcript-Variant
Rr606495	regulatory region 606495			435 bp distal
Rr606496	regulatory region 606496			368 bp proximal
Rr606497	regulatory region 606497			682 bp proximal