rs33181743 SNP Detail

Summary

• ID
  rs33181743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155634533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATTCTT TTTTTTTTTA
  ATTCAAAATA ATTAGCCAGG TGCTGTGGCA TACTCCTTTA GTTCAGCACT CAGAAGGCAG
  AAGCACAGGA CTCTGACTTC AAGGCCAGCC TCATGTATAG ACTTGAGTTC CAGAACAGCC
  AGGGCTACAA AGAGAAACCC TGTCATAAAC AAACAAACAA ATAAGACAGG CACATACATA
  Y
  GTACATGTGT GTGTGCGCAT GCGTGTACGT GCACTTTTTT TCTTTTTTTT TTTTTGAAAA
  TGTGACTGTT GCCTAGATAC TATTTTTAAG GCGACTGGAA CGTAGGCACA GATTGGTCTC
  AATGCTAATC CCTAGGGACT GATGAAGAAA GAGTGGAAAG GTGGCCTCAG AGCTGCTGTT
  TTGAGACCTT TAGTTCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46781697	NES10988619	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33181743					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46781697	NES10988619	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155634533 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gnb1	guanine nucleotide binding protein (G protein), beta 1			Intron
				Noncoding-Transcript-Variant
Rr606495	regulatory region 606495			334 bp distal
Rr606496	regulatory region 606496			469 bp proximal
Rr606497	regulatory region 606497			783 bp proximal