rs33176293 SNP Detail

Summary

• ID
  rs33176293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71847910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA GGACTCCCCT ACACCACCAC
  R
  GGCTCTGAGC CTAGCAGGCC TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46243471	mCV24425204	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss145146170	ENSMUSSNP552336	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss322703834	CHEV_8_73919165	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33176293					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71847910 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2310041K03Rik	RIKEN cDNA 2310041K03 gene			895 bp downstream
Babam1	BRISC and BRCA1 A complex member 1			1595 bp upstream
Cpgi20525	CpG island 20525			1501 bp proximal
Rr400925	regulatory region 400925			1361 bp upstream
Rr665042	regulatory region 665042			1794 bp distal
Rr665043	regulatory region 665043			265 bp proximal
Rr665044	regulatory region 665044			509 bp proximal
Rr665045	regulatory region 665045			1105 bp proximal
Tssr77853	transcription start site region 77853			1587 bp upstream
Tssr81705	transcription start site region 81705			528 bp downstream
Tssr81706	transcription start site region 81706			565 bp downstream
Ushbp1	USH1 protein network component harmonin binding protein 1			Intron
				Noncoding-Transcript-Variant