rs33173897 SNP Detail

Summary

• ID
  rs33173897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102284762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGAGAT GTATGAAGCG
  CTTTAACAGT CAAAATGCAG AACTGCAGAA AACAGAGGGA TAAGCTAGAG AAAGCAAGCA
  CACACACACA CACACACACA CACACACACA CACACACACA CACACAAACA CACCCTGCAG
  AGTGGTATGC CGTTTGAGTT ATAGCAATGT TTGATTATTT TAGACAGTGT TTATAGAACC
  Y
  GCCTCTGCTT TCCTGCTAGC TGACTGCCCT TGTAGCTCCT TAGATTTGAA GCCTGAAGAC
  AGCAAGCACC CCTGCATTCT CTGGGGCTCT GAGATGGGGA AACATCATCT CTTTAGACCT
  TCAGCAGTTG CGTAGGGATC CCCAAATAAG AACCTATTTT CTCTTTTAAG AATCTCTTAG
  TACTCCTTAA GCTTAGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45245925	mCV23728621	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss147112374	ENSMUSSNP3057674	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss320437766	CHEV_2_102294574	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33173897					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102284762 () rs orientation: forward

Symbol	Name	Function Class
Rr561696	regulatory region 561696	1828 bp distal
Rr561697	regulatory region 561697	579 bp distal
Rr561698	regulatory region 561698	826 bp distal