rs33172993 SNP Detail

Summary

• ID
  rs33172993
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127082931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTTCCCTCC CAGGAGGCAG CACTGGGGTG GTTAATATAC ACCAGGTAGA TTCGACTTTT
  GTCTCCTTAT CACAATCTCA GACATGGTAT TTCAATGTCT GCTTTCTGTT CTCTGGGACA
  CCATGAACAA CATGAATAAT GCTGAAAGGT GATTCATTTT CCCCTCGGCC AGCCGTTTTA
  AAATGATCTC AATACCCCAC TCCCCCTTCA GAAAACTAAA AGCACAGCCC CCAAAGCTTT
  TATTACCTAG GTTATATTCA TTGATACTTG TTACATTAAA AATTAAGGCA GTTTGTTTTT
  W
  AAAAAAAAAA ACTTCATTAA CATATTTTAA GAAAAATAAA TCCTGGGAGA AGAGTAGCAT
  GGTACAGTGT TATAATCACT TTACGTCTAG CTTAAGAGAA GCCAGTTAGC GTGTCTGCTC
  AGTCTGTTGT ATGGTTGAGC TGAGCATGTC AACTTCAGGT TGGGAAAGAA GAGTTTCCAA
  ATCACTGTGG CTGTCCTTAG ATACTACTGT ATGGTACTGT ATGTGGAAGT TTCCTAAAGG
  CAGTGTAGGC TCCTCAGCTG TACCCATGCA TCCTGTACTG TTAAAACCAC TGCCCCATCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45246017	mCV22836093	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33172993					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127082931 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	mRNA-UTR
Rr564475	regulatory region 564475	594 bp distal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	560 bp downstream