rs33171975 SNP Detail

Summary

• ID
  rs33171975
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102635071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTTTCAC CCTTCTCCTT TTATCTTTCT GACATCTTTT
  TCTGGATATT CTCTATTTCT TGAGGAGACT TCAAGTGATA GGAGGGAGAA AGTAAAAAAG
  M
  AAAGCTCTCA AGAACTCCAC TGACTTCATC AGAAATCTGA ATTTCCTTCA GGTCTCCAAC
  TGCTCAAAAC CTGCCTCCCC ACTTCTAAGC AGATAAATT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45245747	mCV25049788	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss147124508	ENSMUSSNP1090965	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33171975					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102635071 () rs orientation: forward

Symbol	Name	Function Class
Rr561739	regulatory region 561739	750 bp distal
Rr561740	regulatory region 561740	657 bp distal
Rr561741	regulatory region 561741	219 bp distal
Rr561742	regulatory region 561742	466 bp distal
Rr561743	regulatory region 561743	668 bp proximal