rs33167954 SNP Detail

Summary

• ID
  rs33167954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164247954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCATGC CAAGGTGGCT
  CAGAAATCCT ATGGAAATGA GAAGCGGTAG GTGGCTCCCT ACCCCGACCC AGGTCTCCAC
  AGCCTTCAGC CCTATGCCTC CCTCCAAACC CACCACCATT TAGCTTCTTT GACATCTTGG
  AGGCCTCAAG GCTGACACCT CAGCCATTGT TCAGCCAGGG TCCTGTTCCC CAGCCAACAA
  Y
  AGCTGCCTAC TGGGATCTAG AGCAGAACTT GACAGTGGCT GTCAGATCCC CACATCCCCG
  ACCAGTATCC ATTCATTCTG CTGCGTACTA CATGTCACGC ACCAGGGTCA CTGCTGGGCA
  CTAAGCCTCC AGCTGGACCA GGCAGATACA GCCTCTACTT CCATGGCATC TCCATTCTGG
  TAGGGGACAT GCAGTCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45245246	mCV23181613	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148224526	ENSMUSSNP2846896	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33167954					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164247954 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Matn4	matrilin 4			874 bp upstream
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569598	regulatory region 569598			1433 bp distal
Rr569599	regulatory region 569599			930 bp distal
Rr569600	regulatory region 569600			641 bp distal
Rr569601	regulatory region 569601			1642 bp proximal
Rr569602	regulatory region 569602			1864 bp proximal
Tssr21579	transcription start site region 21579			1634 bp downstream
Tssr21580	transcription start site region 21580			737 bp downstream
Tssr27451	transcription start site region 27451			1413 bp upstream
Tssr27452	transcription start site region 27452			1210 bp upstream
Tssr27453	transcription start site region 27453			1177 bp upstream