rs33161619 SNP Detail

Summary

• ID
  rs33161619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96012865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTATGGA CTTCAGAAAA
  AAAAAGTTTC TGTGCGCTGA TGGAAACTTT AGAAGCTGAT GATGAGTAAG CTGGGGGCTG
  TGTGATCGCA CTCTTCTCAT AATTACTAGG TTAACGGTGT GGCTCCTGTT GAGATGGAAT
  GGGATTTGTT TACTGGGCCG GCGTATTTTT AGCCTGTCGG CTCACAAGGA CCAGCCCTCA
  R
  AGTCTGTCTC TCTTCTCTGG TGATAGAGTG TCAGTCTAAC ATAGGTGTCT TTTCTGGGCA
  CAAGACACAT GTAAAAATGG GGAAGTTGAG AGAAGCGAAC TGGTGAGATT TGATCTAAGA
  GGTTATTCCC CCTCCCCCAA ATTTTTTTTT CCCCTTAGGG AATTTTCATG ACTGCAAAGC
  CAATCGCTAA CCCGCTTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46779611	NES10725623	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33161619					SNP	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779611	NES10725623	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96012865 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm30044	predicted gene, 30044			1197 bp upstream
Otud7b	OTU domain containing 7B			Intron
				Noncoding-Transcript-Variant
Rr581150	regulatory region 581150			1172 bp distal
Rr581151	regulatory region 581151			1016 bp distal
Rr581152	regulatory region 581152			within coordinates
Tssr30678	transcription start site region 30678			1064 bp downstream
Tssr30679	transcription start site region 30679			982 bp downstream
Tssr30680	transcription start site region 30680			726 bp downstream