rs33159984 SNP Detail

Summary

• ID
  rs33159984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95989852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGATGA GCACTCTCAA
  GATGGGGTGT CAAACTGTTT TTTTCTCTTT TCTAAAGACT GATAGTTCAA TGCTAGAGGA
  CACTAAGTGT TCCAAATGTC CTTACTTTGC TGGGGTATCC ATGACCCCCA TCCTGTACTC
  GCCCTCTGCC CCTTAGTCGG ATTCAAGTGC TTACTGTCTT CTTACACTTA GCTTATGTTG
  Y
  TCATCAGAAA GTCTTTAAGT ACTAGATGGC TATTAAGAGG GTGATGTATG AAGAAAGCTG
  CTTAAATTAA TCATGCAATG AATTTCAGTG CTGCAAAGTG CGCTGACATC TTAAAAATCC
  ATTATTAATT ATAAAATTAA AAACTGCAAC ATCCAAAGTA TGTTATTTTG GATAAACCAA
  GGCCTGCTAA TATATTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46779482	NES10726919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33159984					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779482	NES10726919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95989852 () rs orientation: forward

Symbol	Name	Function Class
Rr581136	regulatory region 581136	1226 bp distal
Rr581137	regulatory region 581137	1327 bp distal