rs33159743 SNP Detail

Summary

• ID
  rs33159743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:162358921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCTTCAGT GATCCACGGA TAATTTACTA AGCAGGCAGT
  ATGCTCAGAT ACTGTACATC ATCGTCCAAA GGCAAACTTG TCCTGCCGAG AGCCAACAGT
  Y
  AGCTCTGCCC TGGAAATGAA AAACGGGCTC CCGGGAACAA CAGATCCTGG ATGCAGGAGA
  GACAGAAGCA CAGCCTTGAC TGCAGTAATA CTCCAATCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45244419	mCV23583856	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss320600800	CHEV_2_162342737	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33159743					SNP	C	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162358921 () rs orientation: forward

Symbol	Name	Function Class
Ptprt	protein tyrosine phosphatase receptor type T	Intron
Rr569207	regulatory region 569207	120 bp proximal