rs33156686 SNP Detail

Summary

• ID
  rs33156686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155380346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATTTTTT CTGAGACAGG
  GTCTTTCTAT GTAGCCTTGC TGGCTTGGAA TTTGCTACGT TGAACAGGCT GGCCACAAAA
  AAAAATCGCA GAGAGCTGCC AGGCTCTTGT CTTCAGAGTG CTGGGATTAA AGGTGTGCAC
  CACCATGCCT GGCTGGTGGC TATTTAAGAT CTATACTTGA ATCATTAACA TTTCAGAAAA
  Y
  GTGCCATTAA AACAACAACA ACAAAAAAAA GCAAAACCAA GCCCCAGGTC TCTATTCTCC
  AGAACTCACA GGAAATAGAT TAATGGTATA AAAAGCATTT TAAAGTCTGT CTCTCACGCT
  GCCAATTTGT TTCTTGCTCT CATTTTTCAA TCATGTATTT TAATTTTTTT CAAACATATC
  AAGCGCTCAT CTTGTATTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46778314	NES11001166	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		T
ss321441571	CHEV_4_154669998	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33156686					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778314	NES11001166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155380346 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			within coordinates
Rr606444	regulatory region 606444			363 bp proximal
Rr606445	regulatory region 606445			1104 bp proximal
Rr606446	regulatory region 606446			1401 bp proximal