rs33155979 SNP Detail

Summary

• ID
  rs33155979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96014386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAGTTGCC TTAATCCCTG GGAGTTGGCT GGTGCCAATC
  ATAGTTATGA CACATGGGTA ATTTCTGTTT ATATCTAACT TCCTTTTGTT GAACTGTATA
  Y
  GTTACTCTAC CAGGTATGGA TTGAAGCATT TGACTAAACC TAGGAATGAG TTTAGAACAA
  GCAGCTCAAT ATATCCACTG CTAGTCTCAG TTCTTAGACG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46779638	NES10725641	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33155979					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779638	NES10725641	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96014386 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13535	CpG island 13535			1967 bp distal
Otud7b	OTU domain containing 7B			Intron
				Noncoding-Transcript-Variant
Rr581152	regulatory region 581152			1161 bp distal
Tssr30681	transcription start site region 30681			1447 bp upstream
Tssr30682	transcription start site region 30682			1460 bp upstream
Tssr30683	transcription start site region 30683			1495 bp upstream
Tssr30684	transcription start site region 30684			1514 bp upstream