GGTGCTGGGA TCTAAACTCA GGCTCTCAAG GTCGTGCAGC AAGCCCTCTC GGCCACTGAG CCATCTCTCC AGCCCAATCT TAAACTTCTG GCTGCCCTGC CTCTGTTTCC GTGAGTGCTG GGATCACAGG CACTGTGGCG CCTCCTGGGG GTGGAATTCT GGGACTTGAC TCTGCGAGAG CAACCACTCT GCATATTGAG M GATATCTCCA GGGATAGACT GAGCTCTATC AGCAGCCTCT CGAATCTTTT GGGGGAAAGG TCTTGATATA TAGCCCAGGC TTGTCTTAGC CTCAGTGCTG TGCTTACAGG TCTGTCAGGA GAGTCACTCT TACCAGGGGC CAGGAAAGAG GAACTGCTGA CCAAAGATAG CATGGACTTA CCAATATGGA CTGGACTGAG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46778305 | NES11001227 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | ||
ss321441562 | CHEV_4_154669533 | CHEVERUD | SCREENING_POP | f | SNP | A | C | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs33155728 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46778305 | NES11001227 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr4:155379881 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Prkcz | protein kinase C, zeta | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr606443 | regulatory region 606443 | 253 bp proximal | ||||||
Rr606444 | regulatory region 606444 | 828 bp proximal | ||||||
Rr606445 | regulatory region 606445 | 1569 bp proximal | ||||||
Rr606446 | regulatory region 606446 | 1866 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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