rs33155138 SNP Detail

Summary

• ID
  rs33155138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96013605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCTAGTC TATTGATATT TTGAAGGTTA AAGAGAATGT
  AAAATAAAAG AAATTGCTGT TCCTCCTGTA CAGCACTGAA TGCAGTCTGT TCTGACTTTA
  Y
  GTGAACTGGC ATCTTTCGAG CACCTTTGTA ATCCAGGCTG GTTTCTGTGT ACTTAGAGAT
  TGCACATGAA CACAAATATT AGCTCATGCT AGGCATAATT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46779626	NES10725631	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33155138					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779626	NES10725631	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96013605 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13535	CpG island 13535			1186 bp distal
Gm30044	predicted gene, 30044			1937 bp upstream
Otud7b	OTU domain containing 7B			Intron
				Noncoding-Transcript-Variant
Rr581150	regulatory region 581150			1912 bp distal
Rr581151	regulatory region 581151			1756 bp distal
Rr581152	regulatory region 581152			380 bp distal
Tssr30678	transcription start site region 30678			1804 bp downstream
Tssr30679	transcription start site region 30679			1722 bp downstream
Tssr30680	transcription start site region 30680			1466 bp downstream