rs33154680 SNP Detail

Summary

• ID
  rs33154680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95872550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGTTCA GAAGATTGTC
  TAGTTGCATT TAATTAGAGA GAGAGAGAGA GGTAAGGCCA ATAGAGACAG CCAGTAAAGC
  AACAGCTTCC GAAGTGGAGG CAGGGGGTGA TCACAGCTGC TGGCCTGGCT AACTGACTCC
  ATTTCAAGGT CCTGTGAACA GGAGCTTGCA CCTGTACAAC CACACCACTG AGTGACAGAG
  Y
  ACAAAATAGC GTTACATATG TGCACAGGGC ACATAGCCTG TAATCCCAGC AAAGGAAGGC
  AGACAGGGAG ATGAAGAATT TAAGGGTAGC CTTGGCTACA TAGTGAGTCT GAGGCCAGCC
  TGAGCTACAC GGGACCCTGC TTTAAAAAAA AAGAAGAGGT GGACGGTGCT GGAGAGATGT
  TCCTCCCAAA GGTTAAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46778294	NES10733637	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33154680					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778294	NES10733637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95872550 () rs orientation: forward

Symbol	Name	Function Class
Gm20940	predicted gene, 20940	850 bp upstream
Rr581104	regulatory region 581104	1274 bp distal
Rr581105	regulatory region 581105	1348 bp distal
Rr581106	regulatory region 581106	within coordinates
Rr581107	regulatory region 581107	759 bp proximal