rs33154674 SNP Detail

Summary

• ID
  rs33154674
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95871813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGCCTT GACATTCTCG
  GTGGCGTCAC TGGGCTCGAC CTCAAGAGTG ATGGTCTTGG CCGTCGGGGT CTTCATGAAG
  ATCTGCACGT TGGCGTCTGC TGCTCAGCCA CCTCATTGAA GACAGAGAAG ACAGCCCAGC
  TTGGACTTTA ACATAGCTGG GAAAAGGTCC CGATGTCTCC AGTCAGAGCA TGGCCTTCCA
  M
  ATTTCATTTT TGTTTATTTT TTTTATTTTT CCTTTTTAAT GTGTTTGGGT GTTTTGCCTA
  CGTGTTTGTC TGGAGAGGGC ATTGGATCCC CAGGGACTGG AGTTACAAAT GGTTGTAAGC
  CACTATGTGG CTACTGGCAG TCAAACCCAG GTCCTCGGTA AGAGCAGCCG CAGTGTTCTT
  AATAGCCTAG CCACAGTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46778288	NES10733668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33154674					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778288	NES10733668	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95871813 () rs orientation: forward

Symbol	Name	Function Class
Gm20940	predicted gene, 20940	113 bp upstream
Rr581104	regulatory region 581104	537 bp distal
Rr581105	regulatory region 581105	611 bp distal
Rr581106	regulatory region 581106	664 bp proximal
Rr581107	regulatory region 581107	1496 bp proximal