rs33153940 SNP Detail

Summary

• ID
  rs33153940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155379231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATGAGG GCCAGAAGGA
  GTGAGGCCAG GTGAGGCCGC TGTGCCGCAG GGCTCAGCTG TGGTGCCTGC CATGTGGTTC
  TATTTGAGTC AGACAGCCCA GGCCAAGAGG AGCTCAGTGG CGTTGGAAGC TCCTGACATT
  CTGGCTTGGA AGACTGCGAA CGGCTTCGTG ACAGCTGTGT GAGGGTTTTA TAGTCATGAT
  Y
  CTAATAATCT AAACGTGATC ATTGTCAGCC CTGCTGCTGG TACTTGCAGG ACTTTTGGAA
  TTTCATAGAG TCTGAGGAGA AATCGGTTCG GATCTGGTCA CGCTCTGGCA AATCATGTGC
  CTTTGGGGCA TCTCCACTTA TGCACACAAC CGAGGGCTCC CAACTGTCCC AGAATTATTC
  ACCTCCTTAC ATGTTTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46778284	NES11001338	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33153940					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778284	NES11001338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155379231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			903 bp proximal
Rr606444	regulatory region 606444			1478 bp proximal