ATGCGGAAGA TACCACATGG AGAGGGGCCT GGCACCTCCT TCCTGAATGC GGACCCAGTC TAGCTCAGTA GTTCCCTTCT TGGGCTCCCA TGAGGGCCAG AAGGAGTGAG GCCAGGTGAG GCCGCTGTGC CGCAGGGCTC AGCTGTGGTG CCTGCCATGT GGTTCTATTT GAGTCAGACA GCCCAGGCCA AGAGGAGCTC R GTGGCGTTGG AAGCTCCTGA CATTCTGGCT TGGAAGACTG CGAACGGCTT CGTGACAGCT GTGTGAGGGT TTTATAGTCA TGATCCTAAT AATCTAAACG TGATCATTGT CAGCCCTGCT GCTGGTACTT GCAGGACTTT TGGAATTTCA TAGAGTCTGA GGAGAAATCG GTTCGGATCT GGTCACGCTC TGGCAAATCA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46778281 | NES11001336 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | G | A | A | G | A |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33153937 | SNP | A | A | A | A | A | A | G | A | A | A | G | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46778281 | NES11001336 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr4:155379146 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Prkcz | protein kinase C, zeta | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr606443 | regulatory region 606443 | 988 bp proximal | ||||||
Rr606444 | regulatory region 606444 | 1563 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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