rs33153935 SNP Detail

Summary

• ID
  rs33153935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95871562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTG GACAGGGTGC GACCATCCTC
  Y
  AGCTGTTATC AGCCCCTGCA GGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46778279	NES10733665	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	C	C		C	C	C		C
ss135513266	ENSMUSSNP3430879	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320841281	CHEV_3_95768173	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33153935					SNP	C	C	T	C	T	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778279	NES10733665	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95871562 () rs orientation: forward

Symbol	Name	Function Class
Gm20940	predicted gene, 20940	within coordinates
Rr581104	regulatory region 581104	286 bp distal
Rr581105	regulatory region 581105	360 bp distal
Rr581106	regulatory region 581106	915 bp proximal
Rr581107	regulatory region 581107	1747 bp proximal