rs33151000 SNP Detail

Summary

• ID
  rs33151000
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95905867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTATGG GAGAGAGGAA
  GAGTTATTAA AAACATAGCT CCTTAACTAA AATGTTTTTT AATAAAATGA GACCAGTAAT
  ACTGGAATGG TCTGTAAATA TTATACTGGA TCATTGTATT TAGTCCTTAC TGTCACATGA
  GGAAGGCACT AATTATCTTC ACTTTATGGA GGAGGAAACT GAGCCAGCCA CAAAAGACGA
  W
  TATGTCCAGT ATTGGTTATA TAAATGTGAC AAATCTGAAG GATGCTAAGG AATACTTATC
  AACATATAAG TTAAGGGGTT CAGCAGTCAA GTGTGCTTGC GGCTCTTGCA GAGCCCCTGA
  GTTCAGTTGC CAGCACCCAC ACTGGACAGG CTCTAACTCC AGCCCAGGGA GATCAGATGT
  CCTTTTCTGG TTTCAAGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	PWD/PhJ
ss46778645	NES10732002	PERLEGEN	MM_PANEL2	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	PWD/PhJ
rs33151000					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778645	NES10732002	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95905867 () rs orientation: forward

Symbol	Name	Function Class
Gm65578	predicted gene, 65578	1225 bp upstream
Rr581117	regulatory region 581117	735 bp distal
Rr581118	regulatory region 581118	802 bp proximal
Tssr34586	transcription start site region 34586	1222 bp upstream
Vps45	vacuolar protein sorting 45	1277 bp downstream