rs33150405 SNP Detail

Summary

• ID
  rs33150405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95879189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAAGAGC TCTCTCCCTA
  GGAGGCCAGA AGAAGGTGTT GGGTCCCCAG GTCACTGTGA GGCTCTCTGT GGGTGCTGGG
  AACTCAACCT GAGTCCTCCG AAAAGGTAGT ATATGCTCTT AACCACTGAA CCATCCTTCT
  AGCCTCAATA CAGTTTTTAA TGTGTCTTAG TAAATTGCTT GATAGAAGAT TGTACATTCT
  Y
  ATTTAAACTC TTACCACAGT GCATAGCCAA GTCCATTTCC TGGTTGTCAC ACTTAGTTAG
  AAAGCTAAAT TGAATGCAAA AGATATTGTT TTATGATAAA GTATGTGGTT ATTATAATTA
  TTATTAAGGA TGAGCACGTT CTCATTTTAT GATAATCTAT TTGATTATTT TTATATCACA
  TTTTAGGACT AAGCTTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46778336	NES10733323	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33150405					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778336	NES10733323	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95879189 () rs orientation: forward

Symbol	Name	Function Class
Rr367488	regulatory region 367488	930 bp upstream
Rr397846	regulatory region 397846	304 bp upstream
Rr407358	regulatory region 407358	881 bp proximal
Rr581109	regulatory region 581109	1149 bp distal
Rr581110	regulatory region 581110	224 bp proximal
Tssr30665	transcription start site region 30665	580 bp upstream