rs33149263 SNP Detail

Summary

• ID
  rs33149263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95878756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACGGTGGG TAGAGTGCTT ACCTCAGATC TGTGAGGCTT
  CAGGTTTCCT CCTCAGCTCC GAGAGCAATA GTTGTCTTTA GGATTGTGGA TCAAGTTTTG
  Y
  TGTTGTTGTG TTGCTTTGCT TTGCTTGGTT TTTGGAGACA GGGTTTCTCT GTGTAGCCCT
  GGCTGTCCTG GAACTCACTC TGCAGACCAG ACTGGCCTTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46778333	NES10733347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33149263					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778333	NES10733347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95878756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13531	CpG island 13531	1806 bp proximal
Rr367488	regulatory region 367488	1363 bp upstream
Rr397846	regulatory region 397846	737 bp upstream
Rr407358	regulatory region 407358	1314 bp proximal
Rr581109	regulatory region 581109	716 bp distal
Rr581110	regulatory region 581110	657 bp proximal
Tssr30665	transcription start site region 30665	1013 bp upstream