rs33149260 SNP Detail

Summary

• ID
  rs33149260
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95878599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGACA GGTACTGAAG
  CAGCAGATAT GAGGAAATGG ATGGTATAAA GTTGGGGAAT ATTAAACAAA TTACGACACC
  ATTATGGCCA TGTAGGCATT TTAAGTAATT GTGAGCATTT AAAACAAATG CCCATTGTTT
  TAAGAGAAAA AAAATCAAAG TAAATAACTA TATTCCACGA TCACAAATAT ATTTTAAGTG
  M
  TTTTGAAAGA ATTGGAAGGA GATACACAGG AAGGGTTGTC TTAGTCTGAG GGTATAGCAC
  GGTGGGTAGA GTGCTTACCT CAGATCTGTG AGGCTTCAGG TTTCCTCCTC AGCTCCGAGA
  GCAATAGTTG TCTTTAGGAT TGTGGATCAA GTTTTGCTGT TGTTGTGTTG CTTTGCTTTG
  CTTGGTTTTT GGAGACAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46778330	NES10733386	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33149260					SNP	A	A	A	C	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778330	NES10733386	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95878599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13531	CpG island 13531	1963 bp proximal
Rr367488	regulatory region 367488	1520 bp upstream
Rr397846	regulatory region 397846	894 bp upstream
Rr407358	regulatory region 407358	1471 bp proximal
Rr581109	regulatory region 581109	559 bp distal
Rr581110	regulatory region 581110	814 bp proximal
Tssr30665	transcription start site region 30665	1170 bp upstream