rs33149255 SNP Detail

Summary

• ID
  rs33149255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155381277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTGCAA CAGAGGCGAA
  CGTCCTTAAA AACTGAAAAT GTAGACTCTG GTCGTTTACA GGACATGTCT GTTAACCATT
  TTAGTTGCTT CAGACCTCAA AAGAAATCTT TAATGGTCCT ACCTAGTGGC ACCTCCTAAA
  CCCATCTCCC TGCCCATTCC TAGAGGCGTC TTTTCTTGAG ACCCCAGTTA ACTTGTTCTG
  Y
  TGCTTCCTAT GGGTTCACAA CAGAAGCCAA AGCCCGCCCT GTAGCACAGG GACCAGCCCA
  GGGCTGGTGA CCACCACAAT GAAGAAACCA GCAACCGCGC AAGTCAGCAA GGGGGGCTGA
  CTGTCTGAGG TATTCTTTTA GGGAAAAGCA GAGTGAATAG TTTTCTAGAC CTCACGCTGG
  GACTAACCCA GGGTGAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46778323	NES11001096	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T		C	T	T	C		C
ss321441578	CHEV_4_154670929	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33149255					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778323	NES11001096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155381277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			462 bp distal
Rr606444	regulatory region 606444			547 bp distal
Rr606445	regulatory region 606445			173 bp proximal
Rr606446	regulatory region 606446			470 bp proximal