rs33143176 SNP Detail

Summary

• ID
  rs33143176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155274631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTAGGG AACAAATTGC
  AGACGGGTCA GGAGGGCCCT CCACCCCTGT GCCTCCCAGG CAGACACCTC TGTGGCCTTT
  CTTCCAGTGT CTGTGCCCAA GGTGAAAAGT TCAGGCTGTC CAGTCCCCAG AGGGGATGAA
  GGTGGCCCAG TCTTGCAGAG AATCTGGCCA GCTAGTCCTC CATTTTCCCT CCTGTTTCCT
  R
  GAGGCCAGGG TGGGTCAAGC TTTAGCCAGT ACTTGGGAGT GCGTGGGACA CATGAATTCA
  TACCCATGCC CTCCTCTGGA CTCAAGTGAT CCAGACCTTA GGCCTCCTTG GGCTGTAGTG
  AGGTTGTGCA GGGTCTGTTG GGTTGAGCAC ATACCACCAT TTGTGGGTCC TTCAGAGACT
  CACCTCATCG CCAAGCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776721	NES11005818	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33143176					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776721	NES11005818	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155274631 () rs orientation: forward

Symbol	Name	Function Class
Rr377459	regulatory region 377459	within coordinates
Rr606404	regulatory region 606404	1171 bp distal
Rr606405	regulatory region 606405	within coordinates
Rr606406	regulatory region 606406	343 bp distal
Ski	ski sarcoma viral oncogene homolog (avian)	Intron