rs33141586 SNP Detail

Summary

• ID
  rs33141586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155273962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCACAC ACATAACATG
  CACATATAAT AATAAGATCC CCACCAAAAC CAACACTCCC TAAGTAGTAA GTGTAGTTTA
  AAGAAGAATA AAAGGCAGAA CCTCTGGAGA CAGACCCCAG GGGAGACCCC TGGCTCAGGG
  TGACTCAGCT CCCACAGGCA CCGACCAAGA GCTGTGTGGA TCCACATGCC TACTCCTCTG
  Y
  TGACTTGTCT GTGTCCCTGC ATATCCTCGT GGGGGTAATC CTGCAGTTAA GGTTATGTGC
  TCTGGCCAGA CAGTGCGGTC TTGTTGTCTC CTCACGGCTA GAGGTTTCTC TACATTGACT
  TGAGAGCACA TGCCCAAAAG GCAGGCTGTC CGCGTTAAGA TTTGGAGTCA CCACCATCTG
  TGAGTCTGCC CAGGGCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776700	NES11005806	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33141586					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776700	NES11005806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155273962 () rs orientation: forward

Symbol	Name	Function Class
Rr377459	regulatory region 377459	within coordinates
Rr606403	regulatory region 606403	1742 bp distal
Rr606404	regulatory region 606404	502 bp distal
Rr606405	regulatory region 606405	within coordinates
Rr606406	regulatory region 606406	305 bp proximal
Ski	ski sarcoma viral oncogene homolog (avian)	Intron