rs33141297 SNP Detail

Summary

• ID
  rs33141297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155272721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGAGCCC AGGCCACTGG
  ATAGGATGCA CAAAGGCAGT CCTGCTGAGA CCGAGGGTTC TGCACTCTGA GGCAGAAGTC
  CAGCACCCCA CCTCTGTAGT CAGTATCCAG TAGTTTGCTC CAGTTTTTAT TCTCAGGCAT
  ACACACACTC ACACTCACAT GAAAGTCAGT CTTCCCAGAA TGGTGGTGAG TACCTGCAGG
  Y
  ATCAGGCTCA GCCAGACGCA CCTTTGCCCA CTGCAGTTTT ACTGGCCCAT TTGCTTGATT
  TTTAACATCA TTTCTGGGCT TCTGAAACAC TTAACCTTGG TGGCTGGAGA TTTAGACCAT
  TCAGTGGATT TGTAACCCTC AGAAGGCTCG ACCCTGTCAG AGGTCCATTC CCCGTGGTCT
  GTGCAAAGGG CAAAGGGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776691	NES11005887	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33141297					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776691	NES11005887	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155272721 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377459	regulatory region 377459			593 bp upstream
Rr606403	regulatory region 606403			501 bp distal
Rr606404	regulatory region 606404			within coordinates
Rr606405	regulatory region 606405			1092 bp proximal
Rr606406	regulatory region 606406			1546 bp proximal
Ski	ski sarcoma viral oncogene homolog (avian)			Intron
				Noncoding-Transcript-Variant