rs33141294 SNP Detail

Summary

• ID
  rs33141294
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155272687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGTCCA GGAGATGGAG
  ACACAGCTGC TCCAACAAGA GCCCAGGCCA CTGGATAGGA TGCACAAAGG CAGTCCTGCT
  GAGACCGAGG GTTCTGCACT CTGAGGCAGA AGTCCAGCAC CCCACCTCTG TAGTCAGTAT
  CCAGTAGTTT GCTCCAGTTT TTATTCTCAG GCATACACAC ACTCACACTC ACATGAAAGT
  M
  AGTCTTCCCA GAATGGTGGT GAGTACCTGC AGGCATCAGG CTCAGCCAGA CGCACCTTTG
  CCCACTGCAG TTTTACTGGC CCATTTGCTT GATTTTTAAC ATCATTTCTG GGCTTCTGAA
  ACACTTAACC TTGGTGGCTG GAGATTTAGA CCATTCAGTG GATTTGTAAC CCTCAGAAGG
  CTCGACCCTG TCAGAGGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776688	NES11005885	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33141294					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776688	NES11005885	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155272687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377459	regulatory region 377459			627 bp upstream
Rr606403	regulatory region 606403			467 bp distal
Rr606404	regulatory region 606404			within coordinates
Rr606405	regulatory region 606405			1126 bp proximal
Rr606406	regulatory region 606406			1580 bp proximal
Ski	ski proto-oncogene			Intron
				Noncoding-Transcript-Variant