rs33140318 SNP Detail

Summary

• ID
  rs33140318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155272466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCAGAC TGGGAAAAAG
  TACCCTCAAC ATTTAACAGT CCCCAAGGCG CCTCAGGGCA GGAGTGCACA AAGAAGACCC
  AGACAGAATA CCTCCAAGAT GGCACAATAA CTACAGGAAA AGGCTCTCGT CATGATAAAA
  CATGCATTTC CCTTAGGGGC AATATTTGTG AGGCCACACT TAAGGAGCTT GGGACAAGTC
  R
  CTCTACGTTA CAGAAGTTAC AACAGGTCCA GGAGATGGAG ACACAGCTGC TCCAACAAGA
  GCCCAGGCCA CTGGATAGGA TGCACAAAGG CAGTCCTGCT GAGACCGAGG GTTCTGCACT
  CTGAGGCAGA AGTCCAGCAC CCCACCTCTG TAGTCAGTAT CCAGTAGTTT GCTCCAGTTT
  TTATTCTCAG GCATACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776682	NES11005880	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33140318					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776682	NES11005880	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155272466 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377459	regulatory region 377459			848 bp upstream
Rr606403	regulatory region 606403			246 bp distal
Rr606404	regulatory region 606404			28 bp proximal
Rr606405	regulatory region 606405			1347 bp proximal
Rr606406	regulatory region 606406			1801 bp proximal
Ski	ski sarcoma viral oncogene homolog (avian)			Intron
				Noncoding-Transcript-Variant