rs33140315 SNP Detail

Summary

• ID
  rs33140315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155271846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCACCAAA GGGGCAGGGC
  TGGCACTTTC CATTTCCAGG CAGGCGAAAG AATGAGCTAA TAGCCACTTC GGCCTTTCAC
  TGCCTTCTCT GCCTGAGCAA GCCTTCCCCA GACTGAGCAC TGAGGAAGGC CTTGGGGAAG
  TGATCCACTT CCTATGAGGT CCCACCCACT AAAGAACTAG AGCTAGCAGG ACAGCGATCA
  Y
  AGAAATTATT CTCTCTCTCT CTCCTCTCAC AGACTCTCCC CCCTCTCCTT CCCCCTCTCT
  CCCCCTGTCT CCTTCCCTTC CTCTTCCCCC CTTACACTCT TCCCTTCCCC TCTCACCACC
  CATCTCTCTG AGCAATCCAC TGACCTGAGG AGTGTGGGCA GGGCCTAGAG GCCCCAGCAA
  GTTCCTGCTG CTAAAATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776679	NES11005936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33140315					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776679	NES11005936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155271846 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377459	regulatory region 377459			1468 bp upstream
Rr606403	regulatory region 606403			within coordinates
Rr606404	regulatory region 606404			648 bp proximal
Rr606405	regulatory region 606405			1967 bp proximal
Ski	ski sarcoma viral oncogene homolog (avian)			Intron
				Noncoding-Transcript-Variant