rs33138007 SNP Detail

Summary

• ID
  rs33138007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155275428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCCCCTA TAAACCATTC
  AGCCATTCAC TGCTGAAAAA CTTGCTATTC TCCCAAACAG ACTCTCCTTT TGGCTTATCT
  TGTCTAACCA GCTAAAAAAA TCAAACCTTT CCCTTCTGTA TCTAATTGAA GAAAGAAATC
  AGAACACAGT AGGGCCACAC AGCCAGTCCT CATCCTCTCC TCTGTTGTGG TCTCTCCCTC
  R
  TCCATTCCAG GCCCATTCAT TACCCTGCAG CCCTCAGGAG CCCAAGGGAA GCTGAAAAAT
  TACGTAAAAC TCACCATACT GCTGGAGAAA GGAGTACAAT CTACAAACCA GACAAGACCT
  ACCACAAGCC CCAAACTAAA AAGCAACCTT GTCTGCCCTG TAGTAAGCTG TGTTGTTTGG
  AAAGTGAGGC ACAGAAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776748	NES11005832	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33138007					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776748	NES11005832	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155275428 () rs orientation: forward

Symbol	Name	Function Class
Rr377459	regulatory region 377459	310 bp downstream
Rr606404	regulatory region 606404	1968 bp distal
Rr606405	regulatory region 606405	357 bp distal
Rr606406	regulatory region 606406	1140 bp distal
Ski	ski sarcoma viral oncogene homolog (avian)	Intron