rs33136031 SNP Detail

Summary

• ID
  rs33136031
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155274989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGTGGG TCCTTCAGAG
  ACTCACCTCA TCGCCAAGCA GCCCGCCCTC CTTGCCTGCC TGCCTTGCTT CCCAGAAGTC
  TGCAGGAACC TCTCCCTCTC TTTCTCTCTC TCTGAGCCTG CTGGAGAGAC TCAGTGAGCG
  TGTACTGCAG TCTGCAAAAT GCCCTCCCAC CCCCCACCTT CTGTTTCTCT TTCGGACTGA
  M
  AGGACTGACA GTAACATAGC GCTACCATGT TACAGCTCTT CGGCAACGCC TCCCTTCTTC
  CATGCCTCTC TCAGTGGCCA ACAAACCTGA TCATGATGCA AGAAACACAT GCCCCTAAGA
  CTTTAACAAC AACACCCCAA CCCCAGCTCA TGAGTCAACT CTACTTCAAG GGATAATACA
  GGCAATTGCT TCAGAAGAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46776730	NES11005822	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33136031					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776730	NES11005822	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155274989 () rs orientation: forward

Symbol	Name	Function Class
Rr377459	regulatory region 377459	within coordinates
Rr606404	regulatory region 606404	1529 bp distal
Rr606405	regulatory region 606405	within coordinates
Rr606406	regulatory region 606406	701 bp distal
Ski	ski sarcoma viral oncogene homolog (avian)	Intron