rs33134807 SNP Detail

Summary

• ID
  rs33134807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155214514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAAGTAG CCAGGAGAGA
  GCTTAGGAGA CAGGTGAAGG GTGCCTGCAG TTACCAGCCG GATCTCTCGG GAGATTGTGG
  CAGCCTTCTT CCCTATGCAG AGGGCAGGAG CCCAAGAGTG TCCTGAGAGA ACTGCCTTAG
  TGTGGGGCTC ACACGAAATG CCCAGCGCAG GGCCAGAGCA GACTGACCCA ACAGCAAGGC
  Y
  AGAGAGAAGA GCTGTGCGTG CTGGGGCTGG AAGGAGGGCC TGTGGCCTGC CAGAGCTGAG
  CTGCCTGCTG GCGCTCCTGC AGCAGGATTG CTCATCGGTG ACGCAGTGGG TGTAGGACGA
  GCCAGGAACA CTGGAGGCTG GTAAAGTGCT GGCAGACTGA CAAGCCTTTG ATGCCCCTTA
  AAAGGCGGCA CTGGGACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775890	NES10981079	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33134807					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775890	NES10981079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155214514 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Morn1	MORN repeat containing 1			Intron
				Noncoding-Transcript-Variant
Rr606385	regulatory region 606385			within coordinates
Rr606386	regulatory region 606386			760 bp distal