rs33133638 SNP Detail

Summary

• ID
  rs33133638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155213960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTAGCA GGGTCCAGGG
  AAAGGCTACA GGTCCCTCAG AAGTAGTTAG CACTCAACAA TGGATATATA TCAGGCAGGG
  ATCACTGGAG CAGGTGGGGC ACTCAGAGAA TGGACATGTT TTCCCAACCT TCCATGCCAG
  GGTATGCTGT GCGTATACCC AGTCAGGCGC CGTAACTAGC CCCCTGTCAC AGGAGAAGCA
  R
  CTGAGGTATG AGGGCTTACC ATTCAGCAAT GGCCCTCTTA AATCAAGTCT GGATTTCTGT
  CTGACAAATC TGAGGGCTGC TTGTCACCGT GAGAGGTAAA GAGACAGCGT GTCTGCCGAC
  TCAGCAGGAT GTGGCAGCCA GCGCCACCCC CACTGCTCTA GCACCTATGA GCCATGGCAT
  GGTAGGTACC TTGTAGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775878	NES10981075	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33133638					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775878	NES10981075	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155213960 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Morn1	MORN repeat containing 1			Intron
				Noncoding-Transcript-Variant
Rr606385	regulatory region 606385			within coordinates
Rr606386	regulatory region 606386			206 bp distal