rs33133356 SNP Detail

Summary

• ID
  rs33133356
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:34099862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGTTGTT AGAAATCCCC
  GAAGTATAAC TGCAAAACAA GCACCAGAGA CAGACAAGAA AAATGAAAAG GTAAGCTTGG
  GAACGCATAT GTACAAAGTT TTTAATAAAG CTAATGACAT AAAATTATGC TTTCATGGTT
  AATAAGAGTG TAGTCTTCCA TTTAAGAAAA CTGCAAAATA TGAAGTAGTC ATGGGTAGGT
  K
  GTAAAGTTAA AGTTTTGTTT TGTTTTTAAA GAAGACTATG TCACCATTTT TTTTTTTAAA
  AACATTACAG TGGTGTTAGT AAATGTTTCA TTGTGCCTAA AGTCATTTGC AACTTGAGTA
  TCTTCTGTTT AAGGTTCTGG CTTTATAGGT CTGATACAAA TCTTAACATG ATTCTATCAT
  AATAGAATCC TGTTACTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49447178	NES12601655	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T	T	T	G	T	G	T
ss147537759	ENSMUSSNP3344386	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33133356					SNP	G	T	T	T	T	T	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49447178	NES12601655	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34099862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mtdh	metadherin			Intron
				Noncoding-Transcript-Variant
Tssr131017	transcription start site region 131017			185 bp downstream
Tssr133963	transcription start site region 133963			183 bp upstream