rs33132333 SNP Detail

Summary

• ID
  rs33132333
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95497671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGAACTG TGCTAACTTT
  AAGCTTTATC ACAGATGACT TAGACAAGTG TAATGCTTAG TATAAAAGGG TGTGTGCTCA
  GATTTTTTTT CCCCCATTTA TGGGAATGGT ACTTAGGACC TTATATATGC TAAATAACAC
  TATGCTGTAA CTGTAACACT GAGCCATATT CTAGCCCCTT TTTCTTTTTC TTTTTTGAAT
  S
  AATTCTTTCT TTAAAAAGAC TTATTTTAGT TCTTGCCCTC TTGGTCTCTT GCTCCTCCCT
  TGCTCTTTCC CTGCTTCCCT TCCCCTTTCT CTCCCCATTC CCGTCCCACC TCTCTCTCCA
  CGTGCTCATG ACTCCTCTAC TTCTCTACTC TCTTTCTCTG CCTCTACTAC CCTCGTAACT
  CCCCTCCCCA TGCCCTTAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775609	NES10752293	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33132333					SNP	G	G	G	C	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775609	NES10752293	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95497671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40097	predicted gene, 40097			1543 bp upstream
Gm42671	predicted gene 42671			within coordinates
Golph3l	golgi phosphoprotein 3-like			Intron
				Noncoding-Transcript-Variant
Rr397841	regulatory region 397841			1466 bp downstream
Rr580976	regulatory region 580976			1559 bp distal
Rr580977	regulatory region 580977			1360 bp distal
Rr580978	regulatory region 580978			1531 bp distal
Rr580979	regulatory region 580979			1121 bp distal
Rr580980	regulatory region 580980			276 bp proximal
Tssr30603	transcription start site region 30603			1407 bp downstream
Tssr30604	transcription start site region 30604			1372 bp downstream
Tssr30605	transcription start site region 30605			1351 bp downstream
Tssr30606	transcription start site region 30606			1316 bp downstream