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rs33132331 SNP Detail
Summary
  • ID
    rs33132331
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:95497669 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGTATGAAC TGTGCTAACT
    TTAAGCTTTA TCACAGATGA CTTAGACAAG TGTAATGCTT AGTATAAAAG GGTGTGTGCT
    CAGATTTTTT TTCCCCCATT TATGGGAATG GTACTTAGGA CCTTATATAT GCTAAATAAC
    ACTATGCTGT AACTGTAACA CTGAGCCATA TTCTAGCCCC TTTTTCTTTT TCTTTTTTGA
    R
    TGAATTCTTT CTTTAAAAAG ACTTATTTTA GTTCTTGCCC TCTTGGTCTC TTGCTCCTCC
    CTTGCTCTTT CCCTGCTTCC CTTCCCCTTT CTCTCCCCAT TCCCGTCCCA CCTCTCTCTC
    CACGTGCTCA TGACTCCTCT ACTTCTCTAC TCTCTTTCTC TGCCTCTACT ACCCTCGTAA
    CTCCCCTCCC CATGCCCTTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss46775606 NES10752290 PERLEGEN MM_PANEL2 f SNP A A A A A G A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs33132331 SNP A A A A A G A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46775606 NES10752290 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:95497669 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm40097 predicted gene, 40097 1541 bp upstream
Gm42671 predicted gene 42671 within coordinates
Golph3l golgi phosphoprotein 3-like Intron
Noncoding-Transcript-Variant
Rr397841 regulatory region 397841 1464 bp downstream
Rr580976 regulatory region 580976 1557 bp distal
Rr580977 regulatory region 580977 1358 bp distal
Rr580978 regulatory region 580978 1529 bp distal
Rr580979 regulatory region 580979 1119 bp distal
Rr580980 regulatory region 580980 278 bp proximal
Tssr30603 transcription start site region 30603 1405 bp downstream
Tssr30604 transcription start site region 30604 1370 bp downstream
Tssr30605 transcription start site region 30605 1349 bp downstream
Tssr30606 transcription start site region 30606 1314 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory