rs33132328 SNP Detail

Summary

• ID
  rs33132328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95497141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACTATA ATAAACATTT
  TAAAGGGCTT AAGTATAAAT TTCTGTTTAC ATACAACTGA AGAAAAATCC ATTTCTAAGT
  GTTTAATATA TGCATAGTGG AGAGATAGAA TTCACCTTAA GGCCTCACTT GTCTTTAGTA
  GGCCTTCAAA GACTGGACAG ACAGTATTTA GGGAGGAAAG GAAAAGGAAG AAAACTCCAA
  R
  ATCACAAGGA TCAGAGGCAG AAAGAAAGCA AGATAAAATT GTTGAACTAG GCACAACCAT
  AGCACATTTT AAATATTATT CTTTTGACCT CAAAGATATA TAATTGCTGA TAGTTTTTGA
  CTTGCTTTTA ATCATAAAAA TTGACATTTA TACCAGGCAG TGGTGACACA CCTCTAATTC
  CAGCACTTGG GGAGCAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775603	NES10752357	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	A	G	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33132328					SNP	A	G	G	A	G	A	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775603	NES10752357	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95497141 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40097	predicted gene, 40097			1013 bp upstream
Gm42671	predicted gene 42671			within coordinates
Golph3l	golgi phosphoprotein 3-like			Intron
				Noncoding-Transcript-Variant
Rr397841	regulatory region 397841			936 bp downstream
Rr580975	regulatory region 580975			1868 bp distal
Rr580976	regulatory region 580976			1029 bp distal
Rr580977	regulatory region 580977			830 bp distal
Rr580978	regulatory region 580978			1001 bp distal
Rr580979	regulatory region 580979			591 bp distal
Rr580980	regulatory region 580980			806 bp proximal
Tssr30603	transcription start site region 30603			877 bp downstream
Tssr30604	transcription start site region 30604			842 bp downstream
Tssr30605	transcription start site region 30605			821 bp downstream
Tssr30606	transcription start site region 30606			786 bp downstream