rs33132324 SNP Detail

Summary

• ID
  rs33132324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95496753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGTATTT TAACTAATAA
  GTGGCCACAG GGAAATGATG AATTCCTCAA AGAAAATTGC CCCCATTCTC CCCGGGGTGT
  TAAAGTTTCT TGGATTGGGT TTGGAAATAA TGCCAAATGG AATTGGCACC CTAAGGCATT
  GTTCTGTGTT CTGTTCCTTC ACTCTTCTTA CTTCCCCTGA AAATTATATT TGAAATATAC
  R
  CTTGTATGAA GAATTGTTTG TAAGACTCTT GGTGTGTATT TCTGGTGCTG TTTAATGAGT
  ATATATTTAT TTGAGCAGTT AAAACGTTAA AGATATTGTG CTAGTTGCTA TGGAGAATAT
  AAAAATTAAA AGATGACAAT ATTTCAGCCC TGGAGAAGTT TAATGTAACA GACAGCCATA
  ACAAAAGAGG GACTATAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775597	NES10752355	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33132324					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775597	NES10752355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95496753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40097	predicted gene, 40097			625 bp upstream
Gm42671	predicted gene 42671			within coordinates
Golph3l	golgi phosphoprotein 3-like			Intron
				Noncoding-Transcript-Variant
Hormad1	HORMA domain containing 1			1771 bp downstream
Rr397841	regulatory region 397841			548 bp downstream
Rr580975	regulatory region 580975			1480 bp distal
Rr580976	regulatory region 580976			641 bp distal
Rr580977	regulatory region 580977			442 bp distal
Rr580978	regulatory region 580978			613 bp distal
Rr580979	regulatory region 580979			203 bp distal
Rr580980	regulatory region 580980			1194 bp proximal
Tssr30603	transcription start site region 30603			489 bp downstream
Tssr30604	transcription start site region 30604			454 bp downstream
Tssr30605	transcription start site region 30605			433 bp downstream
Tssr30606	transcription start site region 30606			398 bp downstream