rs33131430 SNP Detail

Summary

• ID
  rs33131430
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95496116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACCAGCA GTGCCAATAC
  AGACAGCTAC AGAAAAACAC CTGCTACACT GAAATTGGCC AACAGAATCC TTTCGTGATT
  GGCAGCACTG TGCTATCTCA CAGAATACTT TGATTGGGTA ATTTCATCGG GGTGGGATGC
  AGCCTTTTCC TCGCAGCCAC CGAGGTTCCT TCATTGGACA GACCAGCTGT CAGGTTGAAC
  S
  CAAACCTGCC TCCTTTTGGT GATGTTTGTC TGGATCGCAA CACAATAGCC CGGAGGACCT
  CCCCTCGTAA GCTCCGATTG GCTAGAGTCA AACTTGGGGG TTTCTGATTG GCCCAATGAA
  GAAACACCAA GGTAGGTTGC CTAGTGATCC TGAGGAAGCT GATGTGTTAT TCCCTCTCTG
  CAACGAAGGA TCAGGAAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775591	NES10752353	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33131430					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775591	NES10752353	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95496116 () rs orientation: forward

Symbol	Name	Function Class
Gm40097	predicted gene, 40097	within coordinates
Gm42671	predicted gene 42671	166 bp upstream
Golph3l	golgi phosphoprotein 3-like	164 bp upstream
Hormad1	HORMA domain containing 1	1134 bp downstream
Rr397841	regulatory region 397841	within coordinates
Rr580975	regulatory region 580975	843 bp distal
Rr580976	regulatory region 580976	4 bp distal
Rr580977	regulatory region 580977	within coordinates
Rr580978	regulatory region 580978	3 bp proximal
Rr580979	regulatory region 580979	196 bp proximal
Rr580980	regulatory region 580980	1831 bp proximal
Tssr30603	transcription start site region 30603	123 bp upstream
Tssr30604	transcription start site region 30604	155 bp upstream
Tssr30605	transcription start site region 30605	186 bp upstream
Tssr30606	transcription start site region 30606	230 bp upstream