rs33131428 SNP Detail

Summary

• ID
  rs33131428
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95496081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCTTAGC CTTATTGCTT
  GGATGCCAAC ATTTCTTAAC CAGCAGTGCC AATACAGACA GCTACAGAAA AACACCTGCT
  ACACTGAAAT TGGCCAACAG AATCCTTTCG TGATTGGCAG CACTGTGCTA TCTCACAGAA
  TACTTTGATT GGGTAATTTC ATCGGGGTGG GATGCAGCCT TTTCCTCGCA GCCACCGAGG
  W
  TCCTTCATTG GACAGACCAG CTGTCAGGTT GAACCCAAAC CTGCCTCCTT TTGGTGATGT
  TTGTCTGGAT CGCAACACAA TAGCCCGGAG GACCTCCCCT CGTAAGCTCC GATTGGCTAG
  AGTCAAACTT GGGGGTTTCT GATTGGCCCA ATGAAGAAAC ACCAAGGTAG GTTGCCTAGT
  GATCCTGAGG AAGCTGATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775588	NES10752352	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33131428					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775588	NES10752352	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95496081 () rs orientation: forward

Symbol	Name	Function Class
Gm40097	predicted gene, 40097	within coordinates
Gm42671	predicted gene 42671	201 bp upstream
Golph3l	golgi phosphoprotein 3-like	199 bp upstream
Hormad1	HORMA domain containing 1	1099 bp downstream
Rr397841	regulatory region 397841	within coordinates
Rr580975	regulatory region 580975	808 bp distal
Rr580976	regulatory region 580976	within coordinates
Rr580977	regulatory region 580977	32 bp proximal
Rr580978	regulatory region 580978	38 bp proximal
Rr580979	regulatory region 580979	231 bp proximal
Rr580980	regulatory region 580980	1866 bp proximal
Tssr30603	transcription start site region 30603	158 bp upstream
Tssr30604	transcription start site region 30604	190 bp upstream
Tssr30605	transcription start site region 30605	221 bp upstream
Tssr30606	transcription start site region 30606	265 bp upstream