rs33130588 SNP Detail

Summary

• ID
  rs33130588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95433847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGATAGA ACTGTGTGTA
  TAAGTGTATG TGTATAACTC TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTTAAGATC
  CTTTGAACTA AAACAAAGGA ACTGATGAGT GAGTATTAGA CACAATAAGT CATACATGAC
  TTGTGTTAAA GGATAAGACA GGGCTTCCTA GGGAATCATG TAGCAACCTG AGATTTGAGG
  Y
  GCCTGATCCA AATGTCTTTA TAACTAAATG TTTCCATCTC AGAACCGATG TGAATAAAAT
  GGACCACCAA AATGACACAG GGTTGGAGGA AAACTTTGTC CTGTTCTCTG CTGAGGTCAT
  TCTATTGATG GCCTCTACCA TGGAGCCCTC TGGGCAGCTC ATTACACACA AACTGTCCCA
  AGGTGAGAAG GAGAGGGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775207	NES10756270	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33130588					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775207	NES10756270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95433847 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	250 bp upstream
Gm56808	predicted gene, 56808	1651 bp upstream
Rr397840	regulatory region 397840	66 bp upstream
Rr580965	regulatory region 580965	1662 bp distal
Rr580966	regulatory region 580966	1454 bp distal
Rr580967	regulatory region 580967	within coordinates
Rr580968	regulatory region 580968	261 bp proximal
Tssr30563	transcription start site region 30563	241 bp upstream
Tssr30564	transcription start site region 30564	264 bp upstream
Tssr30565	transcription start site region 30565	283 bp upstream
Tssr30566	transcription start site region 30566	342 bp upstream
Tssr34486	transcription start site region 34486	1697 bp upstream
Tssr34487	transcription start site region 34487	1641 bp upstream