rs33130584 SNP Detail

Summary

• ID
  rs33130584
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95433332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAAACA AACAAAGAAA
  AAAACCAATG GAGAACTGTG AGAAGGCAGG CGGAGTGTAC GGCACCACCA GAGACTGCTA
  GCCAGAACAG TAAAAACAGG CCCTGCAGAT CACCAAGAAA ACCGATAAAT ACACTAGAAA
  CATGAGCAAA ATAATTGAAA ATGCAATCCT CAGAAAACTC AGTGGTCAAA AACATGGGAG
  W
  GATGCCCATT TTCATTGGTG ATTAATAAAG ATTCAGGTTT AAAAACCAAT AGTTCATTTT
  ACCCCAGCTG TGCCTAGAAG ACCACAGTGG CAGTTGGGTG TATATCCTGG TGTGAGTAAG
  TGTGTGTGTA ACTGTATATG TGTGCATGTG GGTATAACTG TGTGATAACT GTGCTGTATA
  TGTATAACTA TGTGTGAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46775201	NES10756310	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33130584					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775201	NES10756310	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95433332 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	765 bp upstream
Gm40096	predicted gene, 40096	1522 bp upstream
Gm56808	predicted gene, 56808	1136 bp upstream
Rr397840	regulatory region 397840	581 bp upstream
Rr580964	regulatory region 580964	1916 bp distal
Rr580965	regulatory region 580965	1147 bp distal
Rr580966	regulatory region 580966	939 bp distal
Rr580967	regulatory region 580967	484 bp proximal
Rr580968	regulatory region 580968	776 bp proximal
Tssr30563	transcription start site region 30563	756 bp upstream
Tssr30564	transcription start site region 30564	779 bp upstream
Tssr30565	transcription start site region 30565	798 bp upstream
Tssr30566	transcription start site region 30566	857 bp upstream
Tssr34486	transcription start site region 34486	1182 bp upstream
Tssr34487	transcription start site region 34487	1126 bp upstream